Research
Biological questions, computational methods, and sources for further reading.
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Research software
GenomeAgent: an autonomous agent that assembles genomes within the limits of its machine
A scientific agent that plans, runs, evaluates, and replans genome assemblies, with a language model that reasons and a harness that has the final say.
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Master’s thesis · Universidad Nacional de Colombia
Genome analysis and metabolic reconstruction of the Colombia Andean potato variety
A master's thesis on genome assembly and annotation of the Colombia variety of Andean potato and the reconstruction of a genome-scale metabolic model.
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Undergraduate thesis · Universidad Distrital Francisco José de Caldas
Development of a workflow (pipeline) for solid mutant analysis of Solanum tuberosum gr. phureja
An undergraduate thesis on designing a reproducible pipeline to analyse RNA-Seq data from solid mutants of Andean potato.
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